PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ND275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 276aa    MW: 30196 Da    PI: 4.7135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ND275genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039253274323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ C+k F++   L++H +  H
  Aradu.ND275 253 CKSCNKNFNSETGLQQHSKAkH 274
                  *****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-5245273No hitNo description
PROSITE profilePS5015711.011251276IPR007087Zinc finger, C2H2
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEFWGAEVKV GEIVKVDNKE SDVCIHLSQV ALGESKKDKS SEPVVVYLKV GEQKFVVGTL  60
NKEKFPQIAL DLVVEKEFEL SHTSKNASVH FYDSSDEDHP LPVAQNGKTE VKVEEVKVSQ  120
SKKPDAQAGA SKQVKVVEPK KTEDSDDESD EDDEIDSSDE EMEDGESDEE GESDEDDDEE  180
DTPPKKVDQG KKRQNESATK TPISNKKAKN ATPEKTDAKK GGHTATPHPA KKGGKTPNSD  240
GKDTPKSGGQ FLCKSCNKNF NSETGLQQHS KAKHGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935905.11e-157PREDICTED: histone deacetylase HDT1
SwissprotQ8LJS21e-87HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0S3SGZ61e-105A0A0S3SGZ6_PHAAN; Uncharacterized protein
STRINGGLYMA12G30600.13e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-25histone deacetylase 2C